Substructure search - Its method and problem.

Suffix techniques as a rapid method for RNA substructure search.

The RNA Ontology Consortium recently proposed a two-letter representation of the RNA backbone conformation. In this study, we compare the suite notation to a custom string representation that utilizes eta - theta pseudotorsion angles. Both representations were used to assess similarity and self-similarity in several RNA structure datasets. For the detection of similarities between two RNA struc...

Rigid substructure search

MOTIVATION Identifying the location of binding sites on proteins is of fundamental importance for a wide range of applications, including molecular docking, de novo drug design, structure identification and comparison of functional sites. Here we present Erebus, a web server that searches the entire Protein Data Bank for a given substructure defined by a set of atoms of interest, such as the bi...

Substructure search procedures for macromolecular structures.

This paper accompanies a lecture given at the 2003 CCP4 Study Weekend on experimental phasing. The first part is an overview of the fundamentals of Patterson methods and direct methods with the audience of the CCP4 Study Weekend in mind. In the second part, a new hybrid substructure search is outlined.

Online (J, K)-search problem and its competitive analysis

Article history: Received 5 April 2015 Received in revised form 30 May 2015 Accepted 2 June 2015 Available online 9 June 2015 Communicated by D.-Z. Du

Polynomial Time Quantum Algorithm for Search Problem and Its Application